tag:blogger.com,1999:blog-987850932434001559.post3696947395724968878..comments2017-12-17T03:54:08.225-08:00Comments on The 20% Statistician: Why you should use omega-squared instead of eta-squared.Daniel Lakensnoreply@blogger.comBlogger28125tag:blogger.com,1999:blog-987850932434001559.post-56088432198347490702017-09-29T21:39:29.370-07:002017-09-29T21:39:29.370-07:00Yes, if df_total = df_effect + df_error (i.e. one-...Yes, if df_total = df_effect + df_error (i.e. one-way ANOVA), then the formula is correct. But in that case, there are no sources of variability for a partial effect size measure to partial out, so the subscript "p" seems misleading.Anonymousnoreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-30785927034794069172017-07-12T05:13:58.794-07:002017-07-12T05:13:58.794-07:00You suggest changing
(1) (F - 1)/(F + (df_error...You suggest changing <br />(1) (F - 1)/(F + (df_error + 1)/df_effect))<br />into<br />(2) (F - 1)/(F + N/df_effect - 1)<br /><br />Although your formula is not incorrect, Daniel's isn't either. To be more precise: both are equivalent.<br /><br />The difference between (1) and (2) lies in <br />(1) (df_error + 1)/df_effect)<br />and<br />(2) N/df_effect - 1<br /><br />In the designs studied in this blog, N = df_total + 1 = df_effect + df_error + 1.<br />Thus,<br />N/df_effect - 1 <br /> = df_effect/df_effect + (df_error + 1)/df_effect - 1<br /> = 1 + (df_error + 1)/df_effect - 1<br /> = (df_error + 1)/df_effect<br /><br />Thus, your solution coincides with Daniel's.<br />Casper Albershttps://www.blogger.com/profile/05364304504311348392noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-84994645176299518292017-04-25T14:32:58.844-07:002017-04-25T14:32:58.844-07:00Following the standard order of operations, the fo...Following the standard order of operations, the formula is<br />(F - 1)/(F + (N/df_effect) - 1), so there shouldn't be any division by zero.Anonymousnoreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-48513797920112477872017-03-23T07:45:45.975-07:002017-03-23T07:45:45.975-07:00Wait, if that were the case, then wouldn't the...Wait, if that were the case, then wouldn't the formula not work for any dichotomous predictor? As DF effect -1 would be 0? Kyle Morrisseyhttp://dogsbody.psych.mun.ca/rcdmc/Site/Kyle_Morrissey.htmlnoreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-60508898282575328042017-03-18T00:34:17.709-07:002017-03-18T00:34:17.709-07:00Hi, as mentioned above in a comment, I'm not s...Hi, as mentioned above in a comment, I'm not sure - If I have time I'll work out this post into something a bit more complete. Daniel Lakenshttps://www.blogger.com/profile/18143834258497875354noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-1136101265879551432017-03-17T14:13:51.559-07:002017-03-17T14:13:51.559-07:00Hi Daniel,
Can I use your spreadsheet linked here...Hi Daniel,<br /><br />Can I use your spreadsheet linked here to calculate omega squared for a repeated measures ANOVA or is this only for one-way ANOVA. If the latter, do you know of a resource for calculating omega squared for a repeated measures ANOVA (specifically a 2x2x2 design)?<br /><br />Thanks much in advance for your time<br /><br />RachelAnonymousnoreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-70513371442623196482017-01-26T13:35:12.797-08:002017-01-26T13:35:12.797-08:00Unless I'm doing something wrong, the formula ...Unless I'm doing something wrong, the formula for calculating partial omega-squared based on F is incorrect. The equation given:<br /><br />(F - 1)/(F + (df_error + 1)/df_effect))<br /><br />simplifies to:<br /><br />(df_effect * (MS_effect - MS_error))/(df_effect * MS_effect + (df_error + 1) * MS_error)<br /><br />It seems like it should be:<br /><br />(F - 1)/(F + N/df_effect - 1)<br /><br />which simplifies to:<br /><br />(df_effect * (MS_effect - MS_error))/(df_effect * MS_effect + (N - df_effect) * MS_error)<br /><br />which is the equation shown above this one.Anonymousnoreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-78550540755987556302016-12-02T04:30:11.462-08:002016-12-02T04:30:11.462-08:00Ah, yes, I see - I even missed it while doing the ...Ah, yes, I see - I even missed it while doing the calculation above. It's fixed now, and thanks Casper and Anonymous.Daniel Lakenshttps://www.blogger.com/profile/18143834258497875354noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-28922302245462370292016-12-02T04:20:53.507-08:002016-12-02T04:20:53.507-08:00There indeed seems to be a typo there. A mean-squa...There indeed seems to be a typo there. A mean-squares always is equal to the corresponding sum of squares divided by the corresponding degrees of freedom.<br />Thus, rather than "MSw = (SSb/dfb)", it should be "MSw = (SSw/dfw)", which coincides with Daniel's answer here.Casper Albershttps://www.blogger.com/profile/05364304504311348392noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-59730157488295239742016-12-02T04:12:51.186-08:002016-12-02T04:12:51.186-08:00Hi, but it works for the presented ANOVA table, ri...Hi, but it works for the presented ANOVA table, right? 87.127/76 = 1.146? Can you clarify?Daniel Lakenshttps://www.blogger.com/profile/18143834258497875354noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-68141327874913765542016-12-02T04:01:31.168-08:002016-12-02T04:01:31.168-08:00Wait, in the end you're writing that MSw is eq...Wait, in the end you're writing that MSw is equal to SSb/dfb, which is obviously wrong (since epsilon would always be zero). It seems to me that it is the sum over the groups of the sum of squares within each group, divided by (N-dfb-1) if N is the total sample size.Anonymousnoreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-18850013930865176372016-11-30T13:11:01.511-08:002016-11-30T13:11:01.511-08:00Just to clarify, for a repeated measures multivari...Just to clarify, for a repeated measures multivariate model, is it ok to use generalized eta-squared? In the spreadsheet, there is the option to get generalized eta squared for within subjects designs using sums of squares (not sue how to do this with a mixed model output), but not generalized omega squared (though you can do this using the F and error). Is the generalized omega squared only for between subjects then? If we are reporting on 2 within subject variables interacting, should we just stick with generalized eta squared? Or is f-squared or omega squared more appropriate? Any clarification is appreciated! - LilyAnonymousnoreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-5153560086334083192016-11-18T05:08:05.324-08:002016-11-18T05:08:05.324-08:00Hi, I'm also not yet sure how well they work f...Hi, I'm also not yet sure how well they work for within designs. This is a topic I'd love to follow up on - it's planned for somewhere early 2017.Daniel Lakenshttps://www.blogger.com/profile/18143834258497875354noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-46837926571667067912016-11-18T04:38:06.695-08:002016-11-18T04:38:06.695-08:00Hi Daniel, thanks for this (and the many other) in...Hi Daniel, thanks for this (and the many other) informative posts! I would love to apply omega- instead of eta-squared, but I am unsure about whether your cool spreadsheet actually makes sense for within subject-repeated measures anova. I end up with values bigger than .3 for both omega- and eta squared. I guess this can't be true and is due to the fact that I have F-values from a within subjects design. Would be great to get your opinion on this. Best wishes!Laurahttps://www.blogger.com/profile/17881118355263753815noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-58392321904467204122016-10-31T02:54:46.857-07:002016-10-31T02:54:46.857-07:00This post has totally convinced me of the importa...This post has totally convinced me of the importance of using ωp² instead of ηp². Thanks for a post and a great, informative blog!SPSS Researchhttp://www.spss-research.com/noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-39933737783611231842016-09-18T23:25:35.810-07:002016-09-18T23:25:35.810-07:00For oneway anova, I think I cobbled together somet...For oneway anova, I think I cobbled together something that gets the confidence interval for omega squared. It uses `conf.limits.ncf` from the MBESS package. It will be in version 0.4-2 of the `userfriendlyscience` package, but for now, see https://github.com/Matherion/userfriendlyscience/blob/master/R/confIntOmegaSq.R and https://github.com/Matherion/userfriendlyscience/blob/master/R/convert.RGjalt-Jorn Petershttps://www.blogger.com/profile/14038282284248239723noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-72219818341517587002016-08-20T06:22:21.318-07:002016-08-20T06:22:21.318-07:00Or you could ignore the first part of that since t...Or you could ignore the first part of that since the formula you give with F, df, N, and J obviously does the job. I'm trying to report an effect size for Welch's ANOVA with non-equal group sizes in naturally occurring (not experimentally manipulated) groups - would this still be suitable? Thanks.<br />Angela Meadowshttp://angelameadows.infonoreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-78404185434757714082016-08-20T06:21:28.585-07:002016-08-20T06:21:28.585-07:00This comment has been removed by the author.Notes From The Fatospherehttps://www.blogger.com/profile/04650370325493742030noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-68860313918470704722016-08-20T06:14:36.513-07:002016-08-20T06:14:36.513-07:00Thank you Daniel - this is really helpful (as are ...Thank you Daniel - this is really helpful (as are the references). Is there a version for calculating omega-squared that only relies on F and df? Also, the link to the excel file with the calculator for this is broken :(Angela Meadowshttp://angelameadows.infonoreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-48649190042929399482015-06-10T02:15:12.924-07:002015-06-10T02:15:12.924-07:00I found a function to easily calculate partial ome...I found a function to easily calculate partial omega-squared in R, and created a function to easily calculate omega-squared:<br /><br />http://pastebin.com/iA6CqQF9<br /><br />Based on:<br />http://stats.stackexchange.com/a/126520<br /><br />Let me know if you spot any errors!Arnoud Plantinganoreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-6327952891954296512015-06-10T01:43:41.878-07:002015-06-10T01:43:41.878-07:00I've written a follow-up to Daniël's post:...I've written a follow-up to Daniël's post: I believe the difference in performance is much less severe than outlined here.<br />http://bit.ly/1JJci70Casper Albershttps://www.blogger.com/profile/05364304504311348392noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-12315841243585517312015-06-10T01:37:58.808-07:002015-06-10T01:37:58.808-07:00Jake's comment got me wondering about the foll...Jake's comment got me wondering about the following issue. Assuming that Anova is what you wan to do, I can't imagine why anyone would plan his sample size based on eta or omega. Significant fraction of sum of squares is just a first step in the analysis for virtually every Anova I've seen reported. Pair-wise post-hoc comparisons follow. These are more critical for sample planning as they require much higher sample size to achieve acceptable power than the variance tests. So you should be planning for highly powered post-hoc tests in the first place, right?matushttp://simkovic.github.io/noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-13126348673410447782015-06-10T01:29:44.384-07:002015-06-10T01:29:44.384-07:00It has little to do with meta-analysis. As I menti...It has little to do with meta-analysis. As I mentioned, if you try to compare conditions of the same study (researchers routinely do this as a part of discussion) with the help of effect sizes you won't be able to do this with the variance-based quantities. No wonder no one reports them and even if they are reported no one discusses them. <br /><br />The question of power analysis is secondary to the question what effect size you report. If you get lost on the first question, answering the second question won't help you get back on the track.matushttp://simkovic.github.io/noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-79665233767448505702015-06-09T10:11:19.326-07:002015-06-09T10:11:19.326-07:00The problems you're describing are things that...The problems you're describing are things that arise when using standardized effect sizes for meta-analysis. And I basically agree with you on that. But I don't think standardized effect sizes are so bad for power analysis, which is what Daniel's talking about. Using standardized effect sizes lets us compute power using fewer assumed parameters, which could be beneficial because the power results depend on fewer uncertain quantities.Jake Westfallhttp://jakewestfall.org/blog/noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-76627339534914686262015-06-09T02:13:12.357-07:002015-06-09T02:13:12.357-07:00These variance-based effect sizes are all perfectl...These variance-based effect sizes are all perfectly useless. The squared errors depend on the number of factors in the Anova and the number of levels of each factor. If these numbers differ across studies or conditions it will affect the ES and you can't compare the studies/conditions. Even if the two studies are exact replications with the exact same factor structure, it may still happen that the variance varies and the ES are not comparable. <br /><br />Fortunately, there is a solution. Unstandardized regression (Anova=regression) coefficients are comparable irrespective of the number of levels and the number of factors. matushttp://simkovic.github.io/noreply@blogger.com