tag:blogger.com,1999:blog-987850932434001559.post4735285577191373559..comments2024-03-28T05:57:40.089+01:00Comments on The 20% Statistician: Calculating confidence intervals for Cohen’s d and eta-squared using SPSS, R, and StataDaniel Lakenshttp://www.blogger.com/profile/18143834258497875354noreply@blogger.comBlogger32125tag:blogger.com,1999:blog-987850932434001559.post-26995502502863699872020-07-13T18:50:09.680+02:002020-07-13T18:50:09.680+02:00>(so no, don’t even think about dividing that p...>(so no, don’t even think about dividing that p = .08 you get from an<br />>F-test by two and reporting p = .04, one-sided)<br /><br />https://twitter.com/doinkboy/status/1280820213647368204?s=20<br /><br />¯\_(ツ)_/¯Nick Brownhttps://www.blogger.com/profile/07481236547943428014noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-53469083120658883772019-03-14T18:21:37.760+01:002019-03-14T18:21:37.760+01:00Hi, thank you very much for this page, this is ver...Hi, thank you very much for this page, this is very helpful!<br /><br />I used the SPSS script to calculate the CIs for eta squared in a MANOVA.<br /><br />However, in some cases, mostly for the main effects in the MANOVA, I obtained an eta squared that was not covered by the CI: For instance I had F (34, 508) = 1.72, partial η2 =.103, 90% CI = [.012; .086]. <br /><br />Is it possible that the multivariate design causes the problem here? And would you have any suggestions on how to fix this?<br /><br />Thanks a lot and best regards,<br />TabeaTabeahttps://www.blogger.com/profile/05619778141992487767noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-64714907435572458192018-01-17T17:27:56.175+01:002018-01-17T17:27:56.175+01:00Great post.Great post.Anonymousnoreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-4414140750201235322017-08-05T16:58:42.467+02:002017-08-05T16:58:42.467+02:00Dear Daniel,
Thank you for this informative page!...Dear Daniel, <br />Thank you for this informative page! it really helps make things clearer. <br />Regarding the question mentioned here about within-subject designs; I found that when I calculate Cohen's d using the MBESS package, as you suggested, I get the value of the effect size you termed "Cohen's d average" which is not influenced by the correlation between my paired observations (I used the "effect size calculation" spreadsheet attached to your great Frontiers in Psychology paper from 2013). So, I assume this is how they calculate Cohen d in the package (right?).<br />Do you think its ok to report this value? or should i try to convert it in someway to a within-design?<br /><br />This is how I performa the calculation in R:<br />cohend <- smd (Mean.1=mean_group1, Mean.2=mean_group2, s.1=sd_group1, s.2=sd_group2, n.1=23, n.2=23)<br />ci.smd (smd=cohend, n.1=23, n.2=23, conf.level=.95)<br /><br />Thank you!!Nataliehttps://www.blogger.com/profile/01434087950809100722noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-42080192987350000242016-11-15T14:46:13.137+01:002016-11-15T14:46:13.137+01:00Hello Daniel,
First of all, thanks a lot for your...Hello Daniel,<br /><br />First of all, thanks a lot for your efforts to help people with their statistical problems. I think that both this blog and your publications (especially your 2013 paper on effects sizes) are extremely helpful. <br /><br />I have the following question: I calculated a 2 x 4 x 3 x 3 MANOVA with two within-subject factors and two between-subjects factors. Importantly, I only have one dependent variable. So I could have calculated a mixed-design ANOVA as well, but I decided to use the multivariate tests (Pillai's trace) provided by SPSS to circumvent the problem of violated sphericity.<br /><br />Can the packages you describe above (CI-R2-SPSS and MBESS) also calculate confidence intervals around partial eta squared in my MANOVA design or are these algorithms limited to ANOVAs? <br /><br />Best regards,<br /><br />Benedikt Anonymoushttps://www.blogger.com/profile/16429240702968565162noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-90126922684118092882016-08-03T19:48:06.750+02:002016-08-03T19:48:06.750+02:00Hello-
Pardon my ignorance. I have a partial eta2...Hello-<br /><br />Pardon my ignorance. I have a partial eta2 of .014, and CI ranging from .00 to .016. This asymmetry seems weird. Did I mess up? The reviewers thought so.Anoreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-15046424034978775802016-07-28T22:04:30.949+02:002016-07-28T22:04:30.949+02:00Hi, Daniel, Thank you for your reply and link!Hi, Daniel, Thank you for your reply and link!hcp4715https://www.blogger.com/profile/00992485847893075583noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-5273147880400541272016-07-28T20:25:51.452+02:002016-07-28T20:25:51.452+02:00Hi, indeed, I don't have the formula's for...Hi, indeed, I don't have the formula's for generalized eta-squared (although you should use omega squared! http://daniellakens.blogspot.nl/2015/06/why-you-should-use-omega-squared.html). It's on my to do list, but CI are not a priority for me at the moment.Daniel Lakenshttps://www.blogger.com/profile/18143834258497875354noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-10857026827780523312016-07-28T18:42:28.577+02:002016-07-28T18:42:28.577+02:00Hi, Daniel, Thank you for keep updating this post....Hi, Daniel, Thank you for keep updating this post.<br /><br />You mentioned that for with-in subject design, the code of MBESS give the confidence interval of ANOVA was same as Smithson script in SPSS. But Smithson's script calculated the CI for partial eta squared, instead of generalized eta squared (I have check it by using you excel sheet). <br />So this means that for the generalized eta squared of repeated-measure ANOVA, we still have no idea how to calculated it ?<br />hcp4715https://www.blogger.com/profile/00992485847893075583noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-28515610467624512462016-07-22T02:45:45.772+02:002016-07-22T02:45:45.772+02:00This comment has been removed by the author.Anonymoushttps://www.blogger.com/profile/14621445334168483519noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-67350360321187221132016-05-05T07:06:07.370+02:002016-05-05T07:06:07.370+02:00hi Daniel, Thank you for this wonderful page. I ha...hi Daniel, Thank you for this wonderful page. I had a problem while running the syntax, it gives me this:<br /><br />>Error # 4070. Command name: END IF<br />>The command does not follow an unclosed DO IF command. Maybe the DO IF<br />>command was not recognized because of an error. Use the level-of-control<br />>shown to the left of the SPSS Statistics commands to determine the range of<br />>LOOPs and DO IFs.<br />>Execution of this command stops.<br /><br />I used the syntax before and it run well, I don't know whats wrong this time, can you please help? Thanks a lot!<br />VickiAnonymoushttps://www.blogger.com/profile/06480858448775736792noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-44869783390904973312016-05-05T07:05:33.407+02:002016-05-05T07:05:33.407+02:00This comment has been removed by the author.Anonymoushttps://www.blogger.com/profile/06480858448775736792noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-33229870637085075672016-03-06T14:13:48.348+01:002016-03-06T14:13:48.348+01:00Hi Daniel, thanks for this page. I'm trying to...Hi Daniel, thanks for this page. I'm trying to learn about the CI's. Just to make sure I'm doing the right things: 1) don't look at the LL and UL's SPSS provides, because these refer to means and differences between the means, while the LL and UL's for the effects sizes are something completely different. 2) Not all parameters, e.g., the observed power, will perfectly overlap between the F-test results in SPSS and the results from the Weunsch syntax, because the former is based on the .05 alpha level, and the latter is based on the 90%CI. <br /><br />Regards, and thanks for the help,<br /><br />TomTge.Damenhttps://www.blogger.com/profile/08702551942732234721noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-32381432164053334862015-08-23T08:54:30.619+02:002015-08-23T08:54:30.619+02:00Hi, check out my code here for how I calculate CI ...Hi, check out my code here for how I calculate CI for a within design using MBESS in R: https://github.com/Lakens/perfect-t-test/blob/master/Perfect_dependent_t-test.RmdDaniel Lakenshttps://www.blogger.com/profile/18143834258497875354noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-58900407823134433622015-08-23T08:49:51.205+02:002015-08-23T08:49:51.205+02:00the CI is around partial eta squared.the CI is around partial eta squared.Daniel Lakenshttps://www.blogger.com/profile/18143834258497875354noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-61087821346045076102015-08-23T00:10:50.142+02:002015-08-23T00:10:50.142+02:00The ci.smd() can only really be used for between-s...The ci.smd() can only really be used for between-subject design. It is simple to use however my data is within-subjects. For the life of me I cannot find how to calculated the CI around Cohen's D for within-subject (paired) data. Is there any adjustment to the ci.smd that can be made?<br />Regards<br />stefAnonymousnoreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-31137598455640190482015-08-05T15:30:05.785+02:002015-08-05T15:30:05.785+02:00Hi
This is really interesting. I am a little in t...Hi <br />This is really interesting. I am a little in the dark about the CIs around the effect in the repeated-measures example. Given that eta square and partial eta square are different what is it exactly that CI is respect to.<br /><br />Thanks in anticipation,<br /><br />Philip.Anonymoushttps://www.blogger.com/profile/12776047480407499836noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-1139906198240152682015-06-23T14:01:00.516+02:002015-06-23T14:01:00.516+02:00Hi Daniel,
Thank you for the great blog! Do you k...Hi Daniel,<br /><br />Thank you for the great blog! Do you know if there is a way to calculate CI around Cramer's V. I looked at the MBESS package and there is a function conf.limits.nc.chisq but it doesn't work for me (says effect size too small). Chisq = 2.39, N=66, 2x2. Any suggestions what I should do?<br /><br />Nikki<br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br />Anonymousnoreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-90480475313451090422015-06-22T21:02:54.186+02:002015-06-22T21:02:54.186+02:00Hi Daniel,
Thanks for the fast reply. Let me give...Hi Daniel,<br /><br />Thanks for the fast reply. Let me give you a bit more of details because I now realize that maybe my question was not very clear. What I have is a 2x3 repeated measures design and I'm testing for differences between specific pairs of cells via contrasts. I read in your paper (Lakens, 2013, p. 8, Frontiers in Psych) that the Cohen's dz 95% CI can be calculated with the ESCI (Cumming and Finch, 2005). I downloaded the ESCI module that accompanies the paper Cumming's paper but I can't find the options to calculate this CI. I calculated the Cohen's dz (and other effect sizes) in your spreadsheet but I would like to have the CI too. <br /><br />Thanks again!<br />Tomás <br /><br /><br />Anonymoushttps://www.blogger.com/profile/14305001160172615109noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-62103126164627588932015-06-22T18:24:16.066+02:002015-06-22T18:24:16.066+02:00Hi, ESCI does not do a one-sample t-test. I'm ...Hi, ESCI does not do a one-sample t-test. I'm not sure if it is formally correct to do a dependent t-test, but set all the values in the second condition to 0 - I think that should work, but I think you should be able to see if it works. Let me know if it does.Daniel Lakenshttps://www.blogger.com/profile/18143834258497875354noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-84396919361975717902015-06-22T16:49:25.726+02:002015-06-22T16:49:25.726+02:00Hi Daniel,
First of all, congratulation (and than...Hi Daniel,<br /><br />First of all, congratulation (and thanks) for the interesting and very useful work on methods and stats that you have been producing. Your effect sizes spreadsheets are lifesaving. <br /><br />So, I have question regarding the ESCI software and the calculation of the 95% CI around Cohen's d (one sample): I can't even find the ESCI module where I can preform this. I searched in all the modules (at least I believe I did) and can't find nothing that looks like the screenshot you have above. Can you please tell me where I can ask for this? Basically I would like to calculate the 95% CI around Cohen's dz, for my results vs. published results. <br /><br />Thanks for taking the time to reply.<br />Best,<br />Tomás Palma<br /><br /><br /><br /><br /><br />Anonymoushttps://www.blogger.com/profile/14305001160172615109noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-54336648421486270932014-09-08T22:22:53.182+02:002014-09-08T22:22:53.182+02:00Ok thanks. Appreciate the re-assurance that I am i...Ok thanks. Appreciate the re-assurance that I am in the right place!Lisanoreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-85351611562203285342014-09-08T21:14:43.559+02:002014-09-08T21:14:43.559+02:00Hi Lisa, I'm pretty sure you have either an F-...Hi Lisa, I'm pretty sure you have either an F-test or t-test. So see above.Daniel Lakenshttps://www.blogger.com/profile/18143834258497875354noreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-60982563307656304992014-09-08T21:11:08.260+02:002014-09-08T21:11:08.260+02:00Hi Daniel,
I'm just wondering if any these pro...Hi Daniel,<br />I'm just wondering if any these programs can calculate effect sizes/95% CIs for planned contrasts? My research question is not concerned with the overall one-way ANOVA.<br />Thank you,<br />LisaLisanoreply@blogger.comtag:blogger.com,1999:blog-987850932434001559.post-9495209724732778182014-06-08T16:54:17.750+02:002014-06-08T16:54:17.750+02:00Hi Daniel, nice post. Just a suggestion: there is ...Hi Daniel, nice post. Just a suggestion: there is nothing wrong in dividing by 2 the p.value of the F test and report it one-side, if one knowns what s/he is doing and explain why.<br />cheersMarcellohttps://www.blogger.com/profile/07809992692419010153noreply@blogger.com